Cistrome Data Browser Provides a comprehensive knowledgebase of all publicly available ChiP-Seq and DNase-Seq data (around 20,000) in human species and mouse. ChIP-seq and DNase-seq have become the standard techniques for studying protein-DNA interactions and chromatin accessibility.
The software provides functionality to analyze and visualize these datasets.
The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale, also known as the in vivo genome-wide location of transcription factor binding-sites or histone modifications". Here we build integrative analysis pipelines (Cistrome) to help experimental biologists, and conduct efficient data integration to better mine the hidden biological insights from publicly available high throughput data.
